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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14269295_14270722_R

Intron Information:

Intron Rank:
154256
Intron Class:
major
Intron Phase:
Intron Coordinates:
14269295 - 14270722
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
81.3
0.98
1
81.43
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030456
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040315
14245112 - 14270797
25686