About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14283187_14284078_F

Intron Information:

Intron Rank:
147256
Intron Class:
major
Intron Phase:
Intron Coordinates:
14283187 - 14284078
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACGTAT
5'SS Class:
major
3'SS Sequence:
CTCTCCTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAT
U12 Branch Point Sequence:
CTCTCCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
75.6
36.7
Major BPS
58.9
0.22
1.4
61.7
43.1
Major PPT
69.8
0.45
0.9
65.8
33.7
Minor 5ss
43.9
-0.7
3.3
64.1
47.4
Minor BPS
68.2
0.57
1.7
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029321
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046218
14282055 - 14284190
2136