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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14305955_14307537_F

Intron Information:

Intron Rank:
139230
Intron Class:
major
Intron Phase:
Intron Coordinates:
14305955 - 14307537
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTCATTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.8
0.69
0.9
77.5
36.5
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024944
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048534
14305705 - 14308455
2751
ENSAPLT00000037432
14295572 - 14308455
12884