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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14382274_14382444_F

Intron Information:

Intron Rank:
145814
Intron Class:
major
Intron Phase:
Intron Coordinates:
14382274 - 14382444
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TATATCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
79.4
0.73
1
80.1
32
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
39.8
-1.1
3
51.1
45.2
Minor BPS
53.8
0.2
1.6
73.27
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028577
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036131
14381928 - 14421204
39277