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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14526243_14529680_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14526243 - 14529680
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ACAGTCTTAACA
Flanking Amino Acid:
TNFCPAPVKRDDPSCVDFFS
Intron Amino Acid Position:
1192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
87
0.83
0.6
85.1
22.4
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
64.5
0.45
1.4
65.86
40.7

Associated Gene:

Gene:
ADAMTS18
Ensembl Gene ID:
ENSAPLG00000008153
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043475
14525127 - 14603252
78126