About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14564271_14565912_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
14564271 - 14565912

Intron Length:
1642

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGGTCAG

5'SS Class:
strong_major

3'SS Sequence:
ATTCTCATTATAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTCAT

U12 Branch Point Sequence:
TTAGTCATAATC

Flanking Amino Acid:
CSRQYLNKFLSTAQAACLID

Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.7
0.79
1
68.8
43.8

Major BPS
94.9
1.12
0.6
93.9
14.7

Major PPT
76.6
0.6
0.8
70.5
34.2

Minor 5ss
32.2
-2
3.1
40
46.1

Minor BPS
55.8
0.16
1.7
67.54
38.3

Associated Gene:

Gene:
ADAMTS18

Ensembl Gene ID:

Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14525127 - 14603252
78126

14526069 - 14603252
77184