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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14566051_14569561_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14566051 - 14569561
Intron Length:
3511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GATTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAATTTTTCACT
Flanking Amino Acid:
AFTIAHESGHNFGMIHDGEG
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84
0.76
0.8
81
36.2
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
60.8
0.42
1.7
77.26
39.3

Associated Gene:

Gene:
ADAMTS18
Ensembl Gene ID:
ENSAPLG00000008153
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008463
14526069 - 14603252
77184
ENSAPLT00000043475
14525127 - 14603252
78126