About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14570476_14571323_R


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
14570476 - 14571323

Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCT|GTAAGTTGT

5'SS Class:
major

3'SS Sequence:
GAAATACCTACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGATGAA

U12 Branch Point Sequence:
TGTCTGTGAAAT

Flanking Amino Acid:
VSLLLLEQEPGGLLINHHAD

Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.3
0.6
1.1
72.1
40.1

Major BPS
60.3
0.26
1.2
51.7
43.9

Major PPT
61.5
0.26
1
51.6
42.4

Minor 5ss
44.8
-0.6
2.9
68.2
42.5

Minor BPS
46
-0.2
2.2
68.37
41.8

Associated Gene:

Gene:
ADAMTS18

Ensembl Gene ID:

Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14525127 - 14603252
78126

14526069 - 14603252
77184