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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14575282_14600708_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14575282 - 14600708
Intron Length:
25427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCTCTAATT
Flanking Amino Acid:
SVAISTCVGLSGLIRTQKIE
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
67.4
0.63
1.6
86.17
33.5

Associated Gene:

Gene:
ADAMTS18
Ensembl Gene ID:
ENSAPLG00000008153
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043475
14525127 - 14603252
78126
ENSAPLT00000008463
14526069 - 14603252
77184