About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14602999_14603150_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
14602999 - 14603150

Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
AAG|GCAGGTCGA

5'SS Class:
strong_major

3'SS Sequence:
TTTTTTCTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
GCCCAAT

U12 Branch Point Sequence:
TCTTTTTTTTCT

Flanking Amino Acid:
TLPWLGSAVKTLQLCCLCCM

Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.3
0.97
0.9
70.6
39.1

Major BPS
46.6
-0.2
1.4
52.6
41.3

Major PPT
96.3
1.04
0.5
92.6
17.2

Minor 5ss
21.9
-3.2
3.8
32.1
42.4

Minor BPS
43.1
-0.4
3.5
74.6
42.8

Associated Gene:

Gene:
ADAMTS18

Ensembl Gene ID:

Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14525127 - 14603252
78126

14526069 - 14603252
77184