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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14689173_14705268_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14689173 - 14705268
Intron Length:
16096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTTTTTACTT
Flanking Amino Acid:
QAEFLLPPIEIKDEESGYNK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.7
0.92
0.7
85.8
27.5
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
57
0.3
1.6
69.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035964
14689059 - 14710632
21574
ENSAPLT00000029738
14689059 - 14710632
21574