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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14703969_14705268_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14703969 - 14705268
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTTTTTACTT
Flanking Amino Acid:
MAHGLQIKDEESGYNK
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.7
0.92
0.7
85.8
27.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57
0.3
1.6
69.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009277
14703951 - 14710632
6682