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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14705376_14705875_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14705376 - 14705875
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATAAGA
Flanking Amino Acid:
VFIPHGVILDRTERLARDIM
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
62.5
42.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.5
0.64
0.7
70.1
30.8
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
53.7
0.11
1.9
69.86
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009277
14703951 - 14710632
6682
ENSAPLT00000035964
14689059 - 14710632
21574
ENSAPLT00000029738
14689059 - 14710632
21574