About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14706060_14706970_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14706060 - 14706970
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TCCTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATGTGAATT
Flanking Amino Acid:
VDFVRIKSYCKDTPTEKMSI
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
61.8
44.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79
0.65
0.7
72.8
32.1
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
50.5
0.09
2.2
77.05
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029738
14689059 - 14710632
21574
ENSAPLT00000009277
14703951 - 14710632
6682
ENSAPLT00000035964
14689059 - 14710632
21574