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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14707031_14707793_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14707031 - 14707793
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
GATAAATTACTT
Flanking Amino Acid:
VGELSTLNGKDIIKTGRTMK
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
77.8
0.63
1.7
92.3
26.6
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
44.3
-0.3
2
61.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029738
14689059 - 14710632
21574