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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14707877_14708871_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14707877 - 14708871
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATGA
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AAAACCATAACC
Flanking Amino Acid:
DNEPKMVKVVSLLIKRIYRS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.7
37.1
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
88.4
0.86
0.7
83.2
25.3
Minor 5ss
42.7
-0.8
3
56.4
47.7
Minor BPS
58
0.23
1.7
65.56
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009277
14703951 - 14710632
6682
ENSAPLT00000035964
14689059 - 14710632
21574
ENSAPLT00000029738
14689059 - 14710632
21574