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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14709653_14710566_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14709653 - 14710566
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTAATTGAAGT
Flanking Amino Acid:
DYNEYFRDLNHICILKERAK
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
47.7
-0
1.9
69.14
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008904
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035964
14689059 - 14710632
21574
ENSAPLT00000029738
14689059 - 14710632
21574
ENSAPLT00000009277
14703951 - 14710632
6682