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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14711930_14712107_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14711930 - 14712107
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGCC
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCGCAG
U12 Branch Point Sequence:
GGCGCCGCAGCG
Flanking Amino Acid:
AAEREAEAKGRECPKEEARR
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
62.4
38.1
Major BPS
36.5
-0.8
1.6
39
42.9
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
34.6
-1.7
3.8
50.4
46.4
Minor BPS
36.2
-1.1
2.2
36.89
44.9

Associated Gene:

Gene:
NUDT7
Ensembl Gene ID:
ENSAPLG00000028392
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017298
14711892 - 14714044
2153