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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14712262_14712477_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14712262 - 14712477
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTATATTTAACA
Flanking Amino Acid:
CLLLTLRAPQLRRSPGEVCF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
77.4
30.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.9
0.51
0.9
63.8
41.5
Minor 5ss
37.9
-1.4
3.2
51.5
45.7
Minor BPS
74.4
0.76
1.4
81.37
33.4

Associated Gene:

Gene:
NUDT7
Ensembl Gene ID:
ENSAPLG00000028392
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017298
14711892 - 14714044
2153