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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14712637_14713660_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14712637 - 14713660
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTTATTT
Flanking Amino Acid:
ICRLVPGIDKMNYLVTPVVG
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.3
0.77
0.8
81.2
36.5
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
53.7
0.19
2
74.92
43

Associated Gene:

Gene:
NUDT7
Ensembl Gene ID:
ENSAPLG00000028392
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017298
14711892 - 14714044
2153