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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14759777_14759851_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14759777 - 14759851
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TACTTTTCAAAC
Flanking Amino Acid:
FAKSWWQVEKNRGGLIKGVM
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71
0.47
1
66.9
37.8
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
51
0.01
1.6
60.43
38.8

Associated Gene:

Gene:
VAT1L
Ensembl Gene ID:
ENSAPLG00000009070
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043395
14734767 - 14786075
51309