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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14759954_14783307_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14759954 - 14783307
Intron Length:
23354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTATCAATAGCT
Flanking Amino Acid:
VVDSLWALEEVKEAMQRIHD
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
79
0.72
1
80.3
31.7
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
52.1
0.15
2.1
79.77
41.4

Associated Gene:

Gene:
VAT1L
Ensembl Gene ID:
ENSAPLG00000009070
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043395
14734767 - 14786075
51309
ENSAPLT00000009439
14734767 - 14786532
51766