About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14783392_14785433_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14783392 - 14785433
Intron Length:
2042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
LDVEKAPTPLMANDSTETSE
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.6
0.78
0.7
81.8
29.8
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
VAT1L
Ensembl Gene ID:
ENSAPLG00000009070
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043395
14734767 - 14786075
51309
ENSAPLT00000009439
14734767 - 14786532
51766