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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14803650_14805930_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14803650 - 14805930
Intron Length:
2281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TATCTGTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGAAGC
Flanking Amino Acid:
ALKEMQALQTVCLRGTKAHK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.1
0.63
0.9
72
37.7
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
59.8
0.29
2
76.54
39.2

Associated Gene:

Gene:
CLEC3A
Ensembl Gene ID:
ENSAPLG00000022572
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021352
14801301 - 14807534
6234