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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14948284_14978177_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14948284 - 14978177
Intron Length:
29894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATGGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTCTTTAATG
Flanking Amino Acid:
TLARPFTKSMGNLSHSSAFV
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
61.5
0.26
1.1
58.6
41.8
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
76.8
0.7
1.3
74.65
38.4

Associated Gene:

Gene:
WWOX
Ensembl Gene ID:
ENSAPLG00000009300
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009685
14821387 - 14978243
156857