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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1518971_1531807_R

Intron Information:

Intron Rank:
153374
Intron Class:
major
Intron Phase:
Intron Coordinates:
1518971 - 1531807
Intron Length:
12837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
88.8
0.87
0.7
88.9
28.2
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029996
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018579
1517683 - 1532021
14339