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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1529336_1531807_R

Intron Information:

Intron Rank:
153376
Intron Class:
major
Intron Phase:
Intron Coordinates:
1529336 - 1531807
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TATTTCACAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
79.9
0.67
0.9
77.2
37.1
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
47.6
-0.1
2
65.9
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029996
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023329
1517683 - 1532021
14339