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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1546218_1559054_R

Intron Information:

Intron Rank:
134853
Intron Class:
major
Intron Phase:
Intron Coordinates:
1546218 - 1559054
Intron Length:
12837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GTATTACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TGTGTATTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
66.2
0.36
1
60
40.5
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
48.8
-0
2
64.58
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019889
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047751
1545233 - 1559779
14547