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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15501446_15504299_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15501446 - 15504299
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTGCTACA
Flanking Amino Acid:
SDNPSSPEFFMP*
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
32.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
89
0.88
0.8
84.3
30.8
Minor 5ss
30.9
-2.2
3.2
40.5
38.7
Minor BPS
44.7
-0.4
2.4
66.46
40.2

Associated Gene:

Gene:
MAF
Ensembl Gene ID:
ENSAPLG00000019538
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018547
15499987 - 15505390
5404