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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1560096_1561821_F

Intron Information:

Intron Rank:
134185
Intron Class:
major
Intron Phase:
Intron Coordinates:
1560096 - 1561821
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAGT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGGTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
71.5
40.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
28.4
-2.5
3.2
39.9
45.7
Minor BPS
46.7
-0.1
1.8
64.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022106
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019385
1559915 - 1562708
2794