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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15628699_15674663_R

Intron Information:

Intron Rank:
151078
Intron Class:
major
Intron Phase:
Intron Coordinates:
15628699 - 15674663
Intron Length:
45965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TCACCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.1
39.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.7
0.56
0.9
68.5
37
Minor 5ss
36.3
-1.5
3.6
52.3
45
Minor BPS
62
0.36
1.5
69.41
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028779
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044735
15628597 - 15674736
46140