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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15724325_15725270_R

Intron Information:

Intron Rank:
151288
Intron Class:
major
Intron Phase:
Intron Coordinates:
15724325 - 15725270
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGCTTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
57.4
0.31
1.6
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028921
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045727
15723594 - 15725896
2303