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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1578142_1582361_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1578142 - 1582361
Intron Length:
4220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAGCT
Flanking Amino Acid:
KLSPSSGTTEAFSGTVIEKE
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.8
81.1
30.9
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
62.5
0.47
1.8
83.49
37.1

Associated Gene:

Gene:
URI1
Ensembl Gene ID:
ENSAPLG00000017568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019705
1575288 - 1620625
45338