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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_157857_165006_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157857 - 165006
Intron Length:
7150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCACATTAAAT
Flanking Amino Acid:
RDLLDTANGHVPKFHVLLDI
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.9
0.58
0.8
70.2
35.9
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
61.7
0.45
1.8
79.62
41.7

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032210
156791 - 195127
38337