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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15806141_15901385_R

Intron Information:

Intron Rank:
132713
Intron Class:
major
Intron Phase:
Intron Coordinates:
15806141 - 15901385
Intron Length:
95245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCATTCACAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
76.5
0.6
1
72.6
42.4
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
53.9
0.2
1.8
73.85
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018638
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027221
15794903 - 15901832
106930