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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15829206_15901385_R

Intron Information:

Intron Rank:
132719
Intron Class:
major
Intron Phase:
Intron Coordinates:
15829206 - 15901385
Intron Length:
72180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TGGTCTGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
47.8
-0
2.2
68.41
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018638
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040134
15806073 - 15925229
119157