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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1584420_1584969_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1584420 - 1584969
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
GTTCCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGGTCTAGACC
Flanking Amino Acid:
FFSHTVEPKRVRINTGKNTT
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
65.4
40.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.1
0.7
0.8
77.5
35.7
Minor 5ss
38
-1.4
2.3
36.6
40
Minor BPS
48.5
-0.1
1.8
58.65
41.1

Associated Gene:

Gene:
URI1
Ensembl Gene ID:
ENSAPLG00000017568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019705
1575288 - 1620625
45338