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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1585995_1589102_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1585995 - 1589102
Intron Length:
3108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
KVEDDSIETKGKYRRAHKPH
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.5
0.84
0.8
83.7
31.3
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
URI1
Ensembl Gene ID:
ENSAPLG00000017568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019705
1575288 - 1620625
45338