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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1589483_1602700_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1589483 - 1602700
Intron Length:
13218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATT
Flanking Amino Acid:
AAELVEHRKKHVRKALDDLQ
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.4
41.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
46.8
-0.3
2.5
58.8
39.3
Minor BPS
65
0.55
1.5
81.43
34

Associated Gene:

Gene:
URI1
Ensembl Gene ID:
ENSAPLG00000017568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019705
1575288 - 1620625
45338