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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15971982_15972387_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15971982 - 15972387
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TATCTGCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCTAT
U12 Branch Point Sequence:
GGTGTCCTATCT
Flanking Amino Acid:
GTGKLPARSAAEVDETLKRI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
66.8
44.6
Major BPS
51
0.03
1.4
52.4
44.8
Major PPT
71.4
0.48
0.9
66
35.5
Minor 5ss
43.9
-0.7
3.2
66.8
43.9
Minor BPS
46.6
-0.1
2
65.81
44.5

Associated Gene:

Gene:
DYNLRB2
Ensembl Gene ID:
ENSAPLG00000009314
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009689
15971661 - 15977003
5343