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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_15978476_15979582_F

Intron Information:

Intron Rank:
140896
Intron Class:
major
Intron Phase:
Intron Coordinates:
15978476 - 15979582
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
77.7
0.62
0.9
74.4
35.1
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
58.6
0.13
2.1
72.41
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025870
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031606
15978340 - 15981134
2795