About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1605191_1609228_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1605191 - 1609228
Intron Length:
4038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTATCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATCAACTTAAAT
Flanking Amino Acid:
VTSCQEKIQHWKKVEGDYEA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
69.7
0.44
1
64
41
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
58.6
0.35
1.7
73.89
42.1

Associated Gene:

Gene:
URI1
Ensembl Gene ID:
ENSAPLG00000017568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019705
1575288 - 1620625
45338