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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16118306_16149614_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16118306 - 16149614
Intron Length:
31309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTGTGATTT
Flanking Amino Acid:
MASGDLYEVERIVDKRKN
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
92
0.94
0.5
92.2
18.2
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
47.8
-0
2.3
75.98
41.3

Associated Gene:

Gene:
CDYL2
Ensembl Gene ID:
ENSAPLG00000009316
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009701
16118282 - 16173022
54741