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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16158538_16165188_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16158538 - 16165188
Intron Length:
6651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCC
Flanking Amino Acid:
TSDNNALTPEIMKEVRRALC
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.9
0.72
0.8
76.7
30.9
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
77.1
0.83
1.5
86.09
32

Associated Gene:

Gene:
CDYL2
Ensembl Gene ID:
ENSAPLG00000009316
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009701
16118282 - 16173022
54741