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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16170102_16170867_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16170102 - 16170867
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGGTTTCACA
Flanking Amino Acid:
TFPQILGVALANEMLFCGRK
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
81.5
0.71
0.9
75.8
38.1
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
49.4
-0
2.3
70.26
42.8

Associated Gene:

Gene:
CDYL2
Ensembl Gene ID:
ENSAPLG00000009316
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009701
16118282 - 16173022
54741