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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16226518_16227968_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16226518 - 16227968
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTTCATT
Flanking Amino Acid:
ISQEVVRLCEESSADLKQAA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
89.7
0.89
0.7
82.2
34.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
55.2
0.24
1.7
71.31
40.8

Associated Gene:

Gene:
CENPN
Ensembl Gene ID:
ENSAPLG00000009538
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009948
16226347 - 16234030
7684