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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16229028_16230358_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16229028 - 16230358
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAC
Flanking Amino Acid:
KGRLQSALKNVTISFREYED
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.6
0.94
0.7
88.3
27.8
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
62
0.36
1.6
74.81
35.9

Associated Gene:

Gene:
CENPN
Ensembl Gene ID:
ENSAPLG00000009538
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009948
16226347 - 16234030
7684