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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16230536_16231264_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16230536 - 16231264
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAC
5'SS Class:
major
3'SS Sequence:
TTTTTATTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAG
Flanking Amino Acid:
LKSNLPLLCQALVVASNYHD
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
68.1
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
1
83.1
31.3
Minor 5ss
38
-1.4
3.2
50.7
46.2
Minor BPS
66.5
0.38
1.7
73.73
38.3

Associated Gene:

Gene:
CENPN
Ensembl Gene ID:
ENSAPLG00000009538
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009948
16226347 - 16234030
7684