Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16232545_16233477_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16232545 - 16233477

Intron Length:

933

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGAAG

5'SS Class:

major

3'SS Sequence:

TTTGTGTTAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTGTGTTAACA

Flanking Amino Acid:

QPKLEFAQYKLETMFKSDPN

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

62.4

43.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

77.8

0.63

73.3

40.9

Minor 5ss

30.3

-2.3

3.3

38.8

46.6

Minor BPS

61.8

0.37

2.1

78.35

38.8

Associated Gene:

Gene:

CENPN

Ensembl Gene ID:

ENSAPLG00000009538

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009948

16226347 - 16234030

7684