Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16233602_16233914_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16233602 - 16233914

Intron Length:

313

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

TAAGCTATAATT

Flanking Amino Acid:

LESLKSLAPAGMADAPLSPL

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

85.2

32.2

Major BPS

76.9

0.67

66.3

40.4

Major PPT

86.1

0.81

0.8

80.9

31.1

Minor 5ss

42.3

-0.9

3.5

64.1

47.4

Minor BPS

54.4

0.22

1.7

70.79

40.4

Associated Gene:

Gene:

CENPN

Ensembl Gene ID:

ENSAPLG00000009538

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009948

16226347 - 16234030

7684